Bacillus subtilis

Bacillus subtilis
Evidence Level
Limited
4 Clinical Trials
4 Documented Benefits
2/5 Evidence Score

Bacillus subtilis is a spore-forming bacterium used as a probiotic. It is taken as dormant spores, and a small study in people with an ileostomy found swallowed spores of the DE111 strain reached the small intestine and began to germinate within about 3 hours. Most human research is on DE111 from Deerland. Small placebo-controlled trials have looked at stool habits in adults with occasional constipation or diarrhea, at an inflammation marker and body fat in college athletes, and at immune cell responses in healthy adults. Results are mixed, the trials were small, and several were funded or run by the maker. A meta-analysis of 33 trials covers a different product that combines B. subtilis with Enterococcus faecium, so it is not evidence for B. subtilis on its own.

Studied Dose The cited DE111 trials used 1 billion CFU a day (stool habits over 90 days, baseball players over 12 weeks, healthy adults over 4 weeks) or 5 billion CFU a day (female athletes over 10 weeks).
Active Compound Live Bacillus subtilis spores. The human trials cited here used strain DE111 (Deerland).

Benefits

Bowel regularity and stool consistency

In a 90-day trial in 50 adults with occasional constipation or diarrhea, 1 billion CFU of DE111 a day improved a bowel transit score within the group, and by the end a larger share of stools were normal than in the placebo group. That comparison counted individual stools rather than people, and the trial was funded and run by the maker.

Inflammation marker and body fat in college athletes

In 25 male baseball players, 12 weeks of DE111 left TNF-alpha, an inflammation marker, lower than placebo, but body composition, performance, hormones and gut permeability did not differ. In 23 female athletes, 5 billion CFU a day for 10 weeks gave a larger drop in body fat than placebo, with no difference in strength or performance.

Spores reach and germinate in the small intestine

In 11 people with an ileostomy, DE111 spores and active cells both appeared in fluid from the small intestine about 3 hours after a capsule was swallowed, and their numbers rose over the next few hours. The study was small and run by the maker, but it shows the spores survived the stomach in people.

Immune cell responses in healthy adults

In a 4-week placebo-controlled pilot in healthy adults funded by the maker, immune cells taken from the DE111 group showed a rise in anti-inflammatory cell types when stimulated in the lab. Gut symptoms, gut bacteria, IL-6, secretory IgA and zonulin were largely unchanged. In baseball players, salivary IgA rose over training in both groups.

Mechanism of action

1

Spore survival and germination

B. subtilis forms dormant spores that can wait out harsh conditions. In people, swallowed DE111 spores reached the small intestine and began germinating within about 3 hours. Lab and genome work on DE111 found genes linked to acid and stress tolerance.

2

Antimicrobial compounds in laboratory tests

Genome and laboratory analysis of DE111 found genes for bacteriocins, which are antimicrobial proteins, and activity against a range of bacteria in culture. Whether this matters in the human gut has not been tested.

3

Digestive enzyme production

In the laboratory, DE111 showed protease, peptidase, esterase and carbohydrate-digesting activity, and it released amino acids and short-chain fatty acids when grown in milk. Whether it adds meaningfully to human digestion has not been measured.

Clinical trials

1
Bacillus subtilis DE111 and daily bowel habits
PubMed

Randomized, double-blind, placebo-controlled trial; 1 billion CFU DE111 or placebo daily for 90 days, with a 105-day total follow-up. Funded by Deerland, and all authors work there. Not PubMed-indexed. (Cuentas et al. 2017, J Probiotics Health)

50 adults aged 18 to 65 with occasional constipation and/or diarrhea (65 enrolled, 15 excluded or withdrawn).

Within the DE111 group, bowel transit scores improved from the first 2 weeks to the last 2 weeks (p = 0.0369), while the placebo group did not change significantly. In the last 2 weeks the share of normal stools was higher with DE111 than with placebo, in a test that counted individual stools rather than people. No adverse effects were reported.

2
Bacillus subtilis DE111 in female college athletes
PubMed

Randomized, placebo-controlled trial during a 10-week offseason resistance training program; 5 billion CFU DE111 or placebo daily. (Toohey et al. 2020, J Strength Cond Res)

23 Division I female soccer and volleyball players during the offseason.

Body fat fell more with DE111 (about 2.05 percentage points) than with placebo (about 0.2 points; group by time p = 0.015). Strength, jump, agility and muscle thickness improved over time in both groups with no difference between them.

3
Bacillus subtilis DE111 in college baseball players
PubMed

Double-blind, placebo-controlled, randomized trial; 1 billion CFU DE111 or placebo daily over 12 weeks of offseason training. (Townsend et al. 2018, Sports (Basel))

25 Division I male baseball players.

TNF-alpha, an inflammation marker, was lower with DE111 than placebo (p = 0.024). There were no group differences in body composition, performance, testosterone, cortisol, IL-10, zonulin or salivary antibodies.

4
Bacillus subtilis DE111 and immune cells in healthy adults
PubMed

Pilot randomized, double-blind, placebo-controlled trial; 1 billion CFU DE111 or maltodextrin placebo daily for 4 weeks. Funded by Deerland, which supplied the capsules. (Freedman et al. 2021, Int J Mol Sci)

46 healthy adults aged 20 to 62 (44 completed).

Blood immune cells from the DE111 group showed more anti-inflammatory cell types after lab stimulation. Perceived gut health, gut bacteria, inflammation markers (IL-6, secretory IgA) and zonulin were largely unaffected; the authors say the study may have been too small to detect differences.

Side effects and drug interactions

Common Potential side effects

Generally well tolerated in the cited trials, which ran up to 90 days; no adverse effects were reported in the bowel-habit trial.
Mild gas or stool changes are possible when starting any probiotic.
Severely immunocompromised or critically ill people should speak with a doctor before taking live probiotics.

Important Drug interactions

Antibiotics: many people take probiotics at least 2 hours apart from antibiotic doses.
No drug interactions were tested in the cited trials.
Tell your doctor or pharmacist what you take, especially immunosuppressants.

Frequently asked questions about Bacillus subtilis

What is Bacillus subtilis used for?

B. subtilis is a spore-forming probiotic. Small trials of the DE111 strain have looked at stool habits, an inflammation marker in athletes and immune cell responses, with mixed results. Its spores reached the small intestine in a small human study.

What makes spore-based probiotics like B. subtilis different?

B. subtilis forms protective spores. In a small study of people with an ileostomy, swallowed DE111 spores survived the stomach and began to germinate in the small intestine within about 3 hours.

How much B. subtilis should I take?

The cited DE111 trials used 1 billion CFU a day, and one athlete trial used 5 billion CFU a day. Follow the product label.

Is B. subtilis safe?

It is generally well tolerated in healthy people. As with all live probiotics, severely immunocompromised or critically ill people should check with a doctor before use.

What is Bacillus subtilis?

Bacillus subtilis is a spore-forming bacterium used as a probiotic. It is taken as dormant spores, and a small study in people with an ileostomy found swallowed spores of the DE111 strain reached the small intestine and began to germinate within about 3 hours. Most human research is on DE111 from Deerland.

Does Bacillus subtilis interact with any medications?

Possible interactions include: Antibiotics: many people take probiotics at least 2 hours apart from antibiotic doses. No drug interactions were tested in the cited trials. If you take prescription medication, check with a pharmacist or doctor before using it.

How strong is the scientific evidence for Bacillus subtilis?

NutraSmarts rates the evidence for Bacillus subtilis as Limited (2 out of 5). It is backed by 4 study summaries and 7 cited references summarized on this page. A higher rating reflects more, larger, and better-designed human studies.

References(7 citations)

Evidence ratings on NutraSmarts are based on the totality of human clinical research, with emphasis on randomized controlled trials, meta-analyses, and systematic reviews. The references below directly support claims made throughout this page.

  1. Zhang N, Chen Y, Shen Z. Live Combined Bacillus Subtilis and Enterococcus Faecium for the Treatment and Prevention of Antibiotic-Associated Diarrhea: A RCT-Based Meta-Analysis. Tohoku J Exp Med. 2026;268(4):559-573. doi: 10.1620/tjem.2025.J125.PubMedUsed to support: Meta-analysis of 33 trials (2919 treated patients) of a combined product of live Bacillus subtilis and Enterococcus faecium given with symptomatic treatment to people on antibiotics: it improved antibiotic-associated diarrhea outcomes versus symptomatic treatment alone. This is a two-species product, so it is not evidence for B. subtilis on its own.
  2. Cuentas AM, Deaton J, Khan S, Davidson J, Ardita C. The Effect of Bacillus subtilis DE111 on the Daily Bowel Movement Profile for People with Occasional Gastrointestinal Irregularity. J Probiotics Health. 2017;5(4):189. doi: 10.4172/2329-8901.1000189.SourceUsed to support: Not PubMed-indexed (read on the publisher site). Randomized, double-blind, placebo-controlled trial in 50 adults with occasional constipation or diarrhea; 1 billion CFU DE111 daily for 90 days. The DE111 group's bowel transit score improved within the group, and in the last 2 weeks its share of normal stools was higher than placebo's in a test that counted stools rather than people. Funded by Deerland, and all authors are Deerland staff.
  3. Townsend JR, Bender D, Vantrease WC, Sapp PA, Toy AM, Woods CA, Johnson KD. Effects of Probiotic (Bacillus subtilis DE111) Supplementation on Immune Function, Hormonal Status, and Physical Performance in Division I Baseball Players. Sports (Basel). 2018;6(3):70. doi: 10.3390/sports6030070.PubMedUsed to support: RCT in 25 male baseball players: 1 billion CFU DE111 daily over 12 weeks lowered TNF-alpha versus placebo (p = 0.024), with no differences in body composition, performance, hormones, zonulin or salivary IgA and IgM.
  4. Toohey JC, Townsend JR, Johnson SB, Toy AM, Vantrease WC, Bender D, Crimi CC, Stowers KL, Ruiz MD, VanDusseldorp TA, Feito Y, Mangine GT. Effects of Probiotic (Bacillus subtilis) Supplementation During Offseason Resistance Training in Female Division I Athletes. J Strength Cond Res. 2020;34(11):3173-3181. doi: 10.1519/JSC.0000000000002675.PubMedUsed to support: RCT in 23 female Division I athletes: 5 billion CFU DE111 daily for 10 weeks of offseason training reduced body fat more than placebo (p = 0.015); strength and performance did not differ between groups.
  5. Freedman KE, Hill JL, Wei Y, Vazquez AR, Grubb DS, Trotter RE, Wrigley SD, Johnson SA, Foster MT, Weir TL. Examining the Gastrointestinal and Immunomodulatory Effects of the Novel Probiotic Bacillus subtilis DE111. Int J Mol Sci. 2021;22(5):2453. doi: 10.3390/ijms22052453.PubMedUsed to support: Pilot 4-week RCT in healthy adults funded by Deerland: DE111 increased anti-inflammatory immune cell populations after ex vivo stimulation, while perceived gut health, microbiota, IL-6, sIgA and zonulin were largely unaffected.
  6. Colom J, Freitas D, Simon A, Brodkorb A, Buckley M, Deaton J, Winger AM. Presence and Germination of the Probiotic Bacillus subtilis DE111(®) in the Human Small Intestinal Tract: A Randomized, Crossover, Double-Blind, and Placebo-Controlled Study. Front Microbiol. 2021;12:715863. doi: 10.3389/fmicb.2021.715863.PubMedUsed to support: Study in 11 people with an ileostomy: swallowed DE111 spores and active cells appeared in ileal fluid from 3 hours after ingestion, showing the spores survived the stomach and germinated in the small intestine. Four authors are Deerland employees.
  7. Mazhar S, Khokhlova E, Colom J, Simon A, Deaton J, Rea K. In vitro and in silico assessment of probiotic and functional properties of Bacillus subtilis DE111(®). Front Microbiol. 2022;13:1101144. doi: 10.3389/fmicb.2022.1101144.PubMedUsed to support: Laboratory and genome study by Deerland staff: DE111 carries genes for acid and stress tolerance, digestive enzymes and bacteriocins, showed antimicrobial activity against several bacteria in culture, and released amino acids and short-chain fatty acids when grown in milk. No human data.